In discussing endogamy and how to run a certain comparison on Gedmatch, someone suggested running my raw data through David Pike's
program. Raw data is from a female.
However, I don't have a clue how to interpret the results.
I have Chr 1-22 with a Mb value (They all are under 2Mb except for Y which is over 50Mb

and then Chr1-22 with a percentage for each chromosome that are homozygous

Then there are total's given in percent for noCalls, heterozygous and homozygous.

So for example if you have 2% no Calls, 30% heterozygous and 68% homozygous

would that indicate having endogamous ancestry?

Can anyone explain what I should be looking for here, or point me to a site with an easy
to understand explanation.

Thanks.