Is there anyway to find out your haplogroups from your raw data?
I uploaded my raw data to promethease and it had a bunch of stuff tagged "haplogroups" and "haplogroup y (y-dna)"., nothing on haplogroups mtdna though however. I am posting this in hopes some kind and knowledgeable person can help me make sense of it.
I'm also confused as to why I even have something labeled y-dna when I am a female. I assume they are inactive genes/passive, quite confusing though. Also can I use these genes to determine what y-dna group I am, even though I'm female? I'm new to learning this dna stuff and really quite confused because I didn't think you could get any information about your y-dna if you were female.
Here are the genes labeled haplogroup y (y-dna):
rs4129148(C;G)
Bad Repute
2 Magnitude
plus Orientation
38.9% Frequency
0.4587 GMAF
4 References
CSF2RA Gene
Y Chromosome
1029445 Position
2 Max Magnitude
20140904 Rs time
3x risk
...less...
Located in the Pseudoautosomal region rs4129148, located near the CSF2RA gene, has been reported in a whole genome association study to be associated with schizophrenia. The risk allele (oriented to the dbSNP entry) is (G); the odds ratio associated with this allele is 3.23 (CI 2.04 - 5.15). [GWAS:Schizophrenia] ... more info...
Haplogroup Y (Y-DNA) Schizophrenia
rs3093457(T;T)
plus Orientation
56.9% Frequency
0.4922 GMAF
1 References
IL9R Gene
Y Chromosome
57184462 Position
20140904 Rs time
...less...
Located in the Pseudoautosomal region ... more info...
Haplogroup Y (Y-DNA)
rs3093467(T;T)
plus Orientation
0.4669 GMAF
1 References
IL9R Gene
Y Chromosome
57186044 Position
20140530 Rs time
Haplogroup Y (Y-DNA)
rs9786025(A;A)
plus Orientation
0.2104 GMAF
0 References
DDX3Y Gene
Y Chromosome
12909611 Position
20140531 Rs time
...less...
[haplogroup:?] ... more info...
Haplogroup Y (Y-DNA) Haplogroups
And ones just labeled "haplogroups":
rs1980459(C;C)
plus Orientation
61.6% Frequency
0.2437 GMAF
0 References
X Chromosome
143264110 Position
20140530 Rs time
...more...
Haplogroups
rs9786025(A;A)
plus Orientation
0.2104 GMAF
0 References
DDX3Y Gene
Y Chromosome
12909611 Position
20140531 Rs time
...more...
Haplogroup Y (Y-DNA) Haplogroups